Medical Causal Hypothesis Verification with Large Language Models

arXiv:2609.00063v1 Announce Type: cross Abstract: The growing use of large language models (LLMs) for search and information retrieval underscores the need to evaluate their reliability in high-stakes domains such as healthcare.

Although LLMs can effectively answer questions about diseases, symptoms, and treatments, their ability to accurately assess causal relationships and ground their conclusions in verified scientific evidence remains unclear. Here, we present a preliminary, small-scale study that investigates the accuracy of LLMs in evaluating causal medical claims and supporting them with peer-reviewed research.

We propose an evaluation framework for causal hypothesis verification that can be used to systematically track the performance of existing and future LLMs. We assess the performance of eight LLMs on 17 medical causal hypotheses to evaluate whether they can reliably verify these hypotheses using scientific evidence from the literature.

We systematically annotate the scientific evidence they provide according to six criteria (a total of 1,067 annotation points) and assess them with nine evaluation metrics. Our analysis shows that while LLMs exhibit strong recall, they often perform poorly at providing valid scientific articles and evidence for support and at rejecting unsupported hypotheses.

These findings highlight a critical limitation of current LLMs, as they cannot yet be trusted fully to verify causal relationships from the biomedical literature. This work underscores the need for rigorous evaluation before using LLMs for search and retrieval in healthcare settings.